- PHYlogenetic REconstruction by use of gene eXpression and alternate mRNA splicing patterns
The user manual give a brief summary of the functions and fileformats used in PHYREX. It also give some hints in how to install PHYREX in an linux environment.
PHYREX v.1.1 documentation.
This is a more thorough documentation of the PHYREX system and contains
backgound information on both biology and information system
architecture.
Documentation on the PAML package can be found here or you can download the PAML user manual.
Supplementary data to the BMC Bioinformatics article can be found here